0.5.0 (2019-07-22)

Changes since 0.4.4 (2019-05-13).

Special Attention

• All biocommons packages now require Python >= 3.6. See https://github.com/biocommons/org/wiki/Migrating-to-Python-3.6

New Features

• #18: Implemented comprehensive sequence normalization (trim, left, right, expand/voca, vcf) [36785fa] (Reece Hart)

• #20: implement hex-based digests à la refget [140a20e] (Reece Hart)

• Add support for cytobands, incl data files from UCSC [0ba4361] (Reece Hart)

• Added accessions.py:coerce_namespace() [e31e592] (Reece Hart)

Internal and Developer Changes

• Added pytest-optional-tests; use test alias in Makefile [ba9b993] (Reece Hart)

• Added trinuc normalization tests [cfe3a68] (Reece Hart)

• Added vcrpy to test requirements [95893f1] (Reece Hart)

• Moved source to src/; updated setup.cfg [ff45fb0] (Reece Hart)

• Removed pip install from tox in favor of deps [8c8f91a] (Reece Hart)

• Renamed doc → docs [1612e5c] (Reece Hart)

• Store assemblies as compressed json [ea79e71] (Reece Hart)

• Update tests to use new vcr cassettes on optional tests (much faster!) [2001745] (Reece Hart)