Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
I
|
L
|
M
|
N
|
P
|
R
|
S
|
T
|
V
A
aa1_to_aa3() (in module bioutils.sequences)
aa3_to_aa1() (in module bioutils.sequences)
aa_to_aa1() (in module bioutils.sequences)
aa_to_aa3() (in module bioutils.sequences)
as_base64() (bioutils.digest.Digest method)
as_base64url() (bioutils.digest.Digest method)
as_base64us() (bioutils.digest.Digest method)
as_hex() (bioutils.digest.Digest method)
B
bioutils
module
bioutils.accessions
module
bioutils.assemblies
module
bioutils.coordinates
module
bioutils.cytobands
module
bioutils.digest
module
bioutils.digests
module
bioutils.exceptions
module
bioutils.normalize
module
bioutils.seqfetcher
module
bioutils.sequences
module
bioutils.vmc_digest
module
BioutilsError
C
chr22XY() (in module bioutils.accessions)
coerce_namespace() (in module bioutils.accessions)
complement() (in module bioutils.sequences)
D
Digest (class in bioutils.digest)
E
elide_sequence() (in module bioutils.sequences)
EXPAND (bioutils.normalize.NormalizationMode attribute)
,
[1]
F
fetch_seq() (in module bioutils.seqfetcher)
from_base64() (bioutils.digest.Digest static method)
from_base64url() (bioutils.digest.Digest static method)
from_base64us() (bioutils.digest.Digest static method)
from_hex() (bioutils.digest.Digest static method)
G
get_assemblies() (in module bioutils.assemblies)
get_assembly() (in module bioutils.assemblies)
get_assembly_names() (in module bioutils.assemblies)
get_cytoband_map() (in module bioutils.cytobands)
get_cytoband_maps() (in module bioutils.cytobands)
get_cytoband_names() (in module bioutils.cytobands)
I
infer_namespace() (in module bioutils.accessions)
infer_namespaces() (in module bioutils.accessions)
L
LEFTSHUFFLE (bioutils.normalize.NormalizationMode attribute)
,
[1]
looks_like_aa3_p() (in module bioutils.sequences)
M
make_ac_name_map() (in module bioutils.assemblies)
make_name_ac_map() (in module bioutils.assemblies)
module
bioutils
bioutils.accessions
bioutils.assemblies
bioutils.coordinates
bioutils.cytobands
bioutils.digest
bioutils.digests
bioutils.exceptions
bioutils.normalize
bioutils.seqfetcher
bioutils.sequences
bioutils.vmc_digest
N
NormalizationMode (class in bioutils.normalize)
normalize() (in module bioutils.normalize)
normalize_sequence() (in module bioutils.sequences)
P
prepend_chr() (in module bioutils.accessions)
R
replace_t_to_u() (in module bioutils.sequences)
replace_u_to_t() (in module bioutils.sequences)
reverse_complement() (in module bioutils.sequences)
RIGHTSHUFFLE (bioutils.normalize.NormalizationMode attribute)
,
[1]
roll_left() (in module bioutils.normalize)
roll_right() (in module bioutils.normalize)
S
seq_md5() (in module bioutils.digests)
seq_seguid() (in module bioutils.digests)
seq_seqhash() (in module bioutils.digests)
seq_sha1() (in module bioutils.digests)
seq_sha512() (in module bioutils.digests)
seq_vmc_id() (in module bioutils.digests)
seq_vmc_identifier() (in module bioutils.digests)
strand_int_to_pm() (in module bioutils.coordinates)
strand_pm() (in module bioutils.coordinates)
strand_pm_to_int() (in module bioutils.coordinates)
strip_chr() (in module bioutils.accessions)
T
translate_cds() (in module bioutils.sequences)
trim_left() (in module bioutils.normalize)
trim_right() (in module bioutils.normalize)
TRIMONLY (bioutils.normalize.NormalizationMode attribute)
,
[1]
V
VCF (bioutils.normalize.NormalizationMode attribute)
,
[1]
vmc_digest() (in module bioutils.vmc_digest)
bioutils
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